Genetic effects for maize traits in acid and non-acid soils

Breeding programs for acid-soil tolerance are desirable as a relatively inexpensive and permanent way for increasing maize (Zea mays L.) yield on these soils. Our objective was to compare the genetic effects controlling the expression of maize traits in acid and non-acid soils. Seven related and one unrelated inbred lines, with different levels of tolerance to acid soil, and their F1, F2, BC1, and BC2 generations were evaluated in four acid and two non-acid soils. Estimates of additive, dominance, and epistatic effects were computed for grain yield, plant height, days to mid-silk, and prolificacy, using the generation means analysis procedure. For all traits the major part of the variation was accounted for by additive and dominance effects, with dominance effects being more important than additive and epistatic effects for both acid and non-acid soils. Epistatic effects were significant for some crosses only, being more pronounced for plant height than for the other traits. Furthermore, epistatic effects were randomly distributed among the crosses and were not related to the grain yield of the single-crosses (F1's) and to the genetic relationships of the inbreds in either type of soil. The results suggest that similar pooled gene effects control the expression of the traits assessed in both acid and non-acid soils.

Microsatellite-assisted backcross selection in maize

A microsatellite marker (SSR) was chosen to simulate a target allele and three criteria (02, 04 and 06 markers per chromosome) were tested to evaluate the most efficient parameters for performing marker-assisted backcross (MAB) selection. We used 53 polymorphic SSRs to genotype 186 BC1 maize (Zea mays L.) plants produced by crossing the inbred maize lines L-08-05 (donor parent) and L-14-4B (recurrent parent). The second backcross (BC2) generation was produced with 180 plants and screened with markers which were not recovered from the first backcross (BC1) generation. A total of 480 plants were evaluated in the third backcross (BC3) generation from which 48 plants were selected for parental genotype recovery. Recurrent genotype recovery averages in three backcross generations were compatible with those expected in BC4 or BC5, indicating genetic gain due to the marker-assisted backcrossing. The target marker (polymorphic microsatellite PHI037) was efficiently transferred. Six markers per chromosome showed a high level of precision for parental estimates at different levels of maize genome saturation and donor alleles were not present in the selected recovered pure lines. Phenotypically, the plants chosen based on this criterion (06 markers per chromosome) were closer to the recurrent parent than any other selected by other criteria (02 or 04 markers per chromosome). This approach allowed the understanding that six microsatellites per chromosome is a more efficient parameter than 02 and 04 markers per chromosome for deriving a marker-assisted backcross (MAB) experiment in three backcross generations

Responses to reciprocal recurrent selection and changes in genetic variability in IG-1 and IG-2 maize populations

This paper reports the effects of three cycles of reciprocal recurrent selection (RRS) on the means, genetic variances, and on the genetic correlations for several traits in the IG-1 and IG-2 maize (Zea mays L.) populations. Interpopulation full-sib progenies from cycle zero (C0) and from cycle 3 (C3) of RRS were evaluated in two locations. RRS was highly effective to improve the traits according the objectives of the program: grain yield and prolificacy increased significantly, while plant height, ear height, and ear placement decreased significantly. Genetic variances for all traits decreased significantly from C0 to C3, but the genetic correlations did not change consistently across the cycles of selection. The expected responses to the fourth cycle of RRS and the probability of selecting double-crosses from C3 that outperform those from C0 showed that the decreases in the genetic variances were not great enough to limit the continued improvement of the populations as well as the use of the improved populations as sources of inbred lines to develop commercial hybrids. However, if the magnitudes of the genetic variances continue to decrease, new sources of improved germplasm should be incorporated into both populations to allow the continued improvement of the interpopulation by RRS

Comparison of similarity coefficients used for cluster analysis with dominant markers in maize (Zea mays L)

The objective of this study was to evaluate whether different similarity coefficients used with dominant markers can influence the results of cluster analysis, using eighteen inbred lines of maize from two different populations, BR-105 and BR-106. These were analyzed by AFLP and RAPD markers and eight similarity coefficients were calculated: Jaccard, Sorensen-Dice, Anderberg, Ochiai, Simple-matching, Rogers and Tanimoto, Ochiai II and Russel and Rao. The similarity matrices obtained were compared by the Spearman correlation, cluster analysis with dendrograms (UPGMA, WPGMA, Single Linkage, Complete Linkage and Neighbour-Joining methods), the consensus fork index between all pairs of dendrograms, groups obtained through the Tocher optimization procedure and projection efficiency in a two-dimensional space. The results showed that for almost all methodologies and marker systems, the Jaccard, Sorensen-Dice, Anderberg and Ochiai coefficient showed close results, due to the fact that all of them exclude negative co-occurrences. Significant alterations in the results for the Simple Matching, Rogers and Tanimoto, and Ochiai II coefficients were not observed either, probably due to the fact that they all include negative co-occurrences. The Russel and Rao coefficient presented very different results from the others in almost all the cases studied and should not be used, because it excludes the negative co-occurrences in the numerator and includes them in the denominator of their expression. Due to the fact that the negative co-occurrences do not necessarily mean that the regions of the DNA are identical, the use of coefficients that do not include negative co-occurrences was suggested.

Reciprocal recurrent selection effects on the genetic structure of tropical maize populations assessed at microsatellite loci

A modified reciprocal recurrent selection (RRS) method, which employed one cycle of high-intensity selection, was applied to two tropical maize (Zea mays L.) populations, BR-105 and BR-106, originating the improved synthetics IG-3 and IG-4, respectively. In the present study the effects of this kind of selection on the genetic structure of these populations and their synthetics were investigated at 30 microsatellite (SSR) loci. A total of 125 alleles were revealed. A reduction in the number of alleles was observed after selection, as well as changes in allele frequencies. In nearly 13 percent (BR-105) and 7 percent (BR-106) of the loci evaluated, the changes in allele frequencies were not explained, exclusively due to the effects of genetic drift. The effective population sizes estimated for the synthetics using 30 SSR loci were similar to those theoretically expected after selection. The genetic differentiation (G ST) between the synthetics increased to 77 percent compared with the original populations. The estimated R ST values, a genetic differentiation measure proper for microsatellite data, were similar to those obtained for G ST. Despite the high level of selection applied, the total gene diversity found in the synthetics allows them to be used in a new RRS cycle

Recurrent mutation-selection to improve rennet production in Candida tsukubaensis

The yeast Candida tsukubaensis is of industrial importance for the production of microbial milk-clotting enzyme. Milk-clotting enzyme is an enzymatic complex capable of coagulating milk for cheese manufacturing. High clotting activity (CA) and low proteolytic activity (PA) are desirable qualities. To study the genetic nature of the CA and PA traits, we analyzed 179 colonies obtained after mutagenic treatment. Analysis of the data obtained for this populations showed that CA and PA are traits controlled by polygenes and that they are correlated (r = 0.3). The existence of a positive correlation indicates that selection for one trait without considering the other may alter one of the traits in an undesirable direction, since the objective of selection would be an increase in clotting activity and a decrease in proteolytic activity. Three cycles of recurrent mutation-selection were carried out to obtain improved strains. The ultraviolet light dose permitting a 5 per cent rate of cell survival was sufficient to generate genetic variability in the three selection cycles. At the end of the third cycle there was an increase of about 98 per cent in clotting activity and a decrease of about 20 per cent in proteolytic activity. Analysis of variance of the selective cycles showed that the linear effects were significant (P < 0.01) for both traits. Estimates of genetic variances and heritabilities of the three selection cycles are presented.